Maxim Integrated Corona (MAXREFDES12) Nexys 3 - Manual (Page 12)

Corona (MAXREFDES12#) Nexys 3 Quick Start Guide
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11. Use the Xilinx SDK to download and run the executable ELF (.ELF) file on the
MicroBlaze using the following steps.
Right-click the mouse while the MAXREFDES12 C project is selected, choose
the Run As menu, and then Run Configurations… menu as shown below.