Care and use manual – Waters Sep-Pak Cartridges and Plates User Manual
Page 4
 
[ Care and Use ManUal ]
Sep-Pak Cartridges and Plates
4
5. Elution Step
Once the interferences are washed off the cartridge, a strong 
solvent is introduced to elute the analytes of interest. The volume 
and flow rate of the eluting solvents should be precisely controlled as 
in the load step to ensure reproducible results.
Table 2. Guidelines on the various types of separation mechanisms
V. storAGe And dIsPosAL oF used CArtrIdGes
Cartridges stored in their original sealed pouch remain stable for long 
periods. To store unused cartridges in opened pouches, squeeze the air out 
of the pouch, fold over the open end of the pouch twice, seal with tape, and 
store in a desiccator.
Dispose of used cartridges safely in accordance with applicable government 
or local regulations.
3. Load Step
When the analytes of interest are not retained by the sorbent, this is 
called analyte breakthrough. For some methods, such as pass-through 
cleanup, analyte breakthrough is desirable and is maximized for 
those specific methods. However, in all other cases, analyte break-
through is unwanted and contributes to poor recovery and method 
reproducibility. Breakthrough occurs when:
• There is too high an organic concentration in the load 
 
solution for very polar analytes. Dilute sample at least 1:1
with water or buffer prior to loading.
• The analytes are bound to proteins, they may pass through 
 
the sorbent. Ensure that analytes are not bound to proteins
by acidifying or basifying the sample.
• Sorbent is overloaded by the matrix component. 
 
Therefore, it is important to choose the correct sorbent
mass (see Table 1).
• The flow rate of the load step is too fast. There is not 
 
enough contact time between the analytes and the sorbent.
Look at the drops and adjust the vacuum so that you see
discrete droplets, not a stream of liquid.
Table 1. Choice of cartridges based on sample size
* LP=large particules (60 µm)
4. Wash Step
The wash steps are designed to remove unwanted matrix components 
that remain from the loading step. The ideal wash solvent removes 
only the matrix while keeping the analytes bound to the sorbent. For 
complex samples this is impossible, so the wash steps are optimized 
using pH, solvent strength, and solvent polarity to remove as much 
matrix as possible while maintaining acceptable analyte recovery. 
Sample Size
Cartridge
1 - 10 mL
1 cc/30 mg or 3 cc/60 mg
10 - 100 mL
3 cc/60 mg or 6 cc/200 mg
100 - 500 mL
6 cc/200 mg or 6 cc/500 mg (LP*)
500 - 1000 mL
6 cc/500 mg (LP) or 12 cc/1 g (LP*)
Reversed Phase
Normal Phase
Ion Exchange
Analyte
Low to
moderate
polarity/
hydrophobic
Moderate to
highly polar/
uncharged
Charged
or ionized
Matrix
Aqueous
Non-polar
organic solvent
Aqueous/low
ionic strength
Condition/
Equilibrate
1. Solvate polar
organic 
2. Water
Non-polar
organic
Low ionic
strength buffer
Wash
Aqueous/buffer Non-polar
Low ionic
strength buffer
Elution 
Steps
Increase polar
organic content
in steps
Increase
moderate to
high polarity
organic content
in steps
Stronger
buffers–ionic
strength or pH
to neutralize
the charge