4 sample preparation, 5 running conditions, 3 denaturing nucleic acid page buffers – Bio-Rad Mini-PROTEAN® TGX™ Precast Gels for 2-D Electrophoresis User Manual

Page 27

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Instruction Manual and Application Guide

8.3 Denaturing Nucleic Acid PAGE Buffers

See Appendix B for buffer formulations. Do not adjust pH unless directed to do so.

Running buffer (1x)

89 mM Tris, 89 mM boric acid, 2 mM EDTA

Dilute 100 ml 10x stock (catalog #161-0733) with 900 ml diH

2

O

Sample buffer (5x)

89 mM Tris, 89 mM boric acid, 2 mM EDTA, pH 8.0, 12% Ficoll,

(catalog #161-0768)

0.01% bromophenol blue, 0.02% xylene cyanole FF, 7 M urea

8.4 Sample Preparation

Determine the desired ssDNA or RNA concentration for your sample based on the detection method
used. Dilute 4 parts sample with 1 part sample buffer.

8.5 Running Conditions

Table 8.1. Running conditions for denaturing nucleic acid PAGE with one (1) Mini-PROTEAN TBE-urea gel in the
Mini-PROTEAN Tetra cell.
Run conditions and times are approximate and assume a constant voltage of 200 V. When running
more than one gel, current will differ.

10% Gels

15% Gels

Power conditions

200 V constant

200 V constant

Expected current (per gel)

Initial

15 mA

15 mA

Final

10 mA

10 mA

Run time

45–60 min

60–75 min

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